Assignment #1. Molecular Mechanics

Use the ChemDraw and Chem3D software for the following questions:

1. Bredt's rule states that elimination in a bridged bicyclic system gives a double bond away from the bridgehead position. This preference diminishes with ring size. Use molecular mechanics with the MM2 force field to minimize the energy of structures 2 and 3 for bridge sizes ranging from n=1 to n=4. Report the steric energies of both structures as well as the differences (make sure that you have obtained the lowest energy structure in each case); examine how the dihedral angle of the double bonds changes with bridge size. Discuss how this relates to Bredt's rule.

Calculated energy difference (3 - 2, kcal/mol)

Theory n=1 n=2 n=3 n=4
MM2 Struc 2
MM2 Struc 3
MM2 diff
AM1 diff 53.84 53.27 27.01 11.51
PM3 diff 50.79 49.10 24.55 9.42
MNDO/3 diff 40.29 46.37 28.37 16.27
HF/3-21G diff 66.0 66.6 31.2 13.2

2. Calculate the difference in steric energy for cis and trans cycloalkenes with n=6 (cyclohexene) to n=9 (cyclononene). Report the steric energies of both structures as well as the differences (make sure that you have obtained the lowest energy structure in each case); examine how the dihedral angle of the double bonds changes with ring size. Discuss how this relates to the stability of trans cycloalkenes.

Calculated energy difference (trans - cis, kcal/mol)

Theory n=6 n=7 n=8 n=9
MM2 cis
MM2 trans
MM2 diff
AM1 diff 59.36 30.90 14.05 4.96